Hb_000032_330

Information

Type -
Description -
Location Contig32: 275528-275860
Sequence    

Annotation

kegg
ID rcu:RCOM_1692050
description hypothetical protein
nr
ID XP_002509963.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000098_210 0.0746072769 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
3 Hb_041063_010 0.0819847801 - - Disease resistance protein RFL1, putative [Ricinus communis]
4 Hb_148817_010 0.0965023474 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
5 Hb_095532_010 0.1045052183 - - BnaC05g27570D [Brassica napus]
6 Hb_004875_040 0.1071911422 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
7 Hb_020805_110 0.1105443472 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_000521_350 0.1199604893 - - unnamed protein product [Vitis vinifera]
9 Hb_000297_220 0.1203933331 - - SAUR family protein [Theobroma cacao]
10 Hb_131029_010 0.1308795847 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_003171_070 0.1369330788 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
12 Hb_131417_010 0.1369484747 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
13 Hb_000676_380 0.1370516023 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_000306_050 0.1375946415 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
15 Hb_006314_020 0.140438411 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
16 Hb_001856_150 0.1430351431 - - -
17 Hb_000670_080 0.1475916078 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001821_030 0.1494150187 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
19 Hb_002054_090 0.1494882347 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
20 Hb_000059_110 0.1517654994 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_000032_330 Hb_000032_330 Hb_000098_210 Hb_000098_210 Hb_000032_330--Hb_000098_210 Hb_041063_010 Hb_041063_010 Hb_000032_330--Hb_041063_010 Hb_148817_010 Hb_148817_010 Hb_000032_330--Hb_148817_010 Hb_095532_010 Hb_095532_010 Hb_000032_330--Hb_095532_010 Hb_004875_040 Hb_004875_040 Hb_000032_330--Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_000032_330--Hb_020805_110 Hb_000098_210--Hb_004875_040 Hb_000098_210--Hb_041063_010 Hb_000098_210--Hb_148817_010 Hb_003171_070 Hb_003171_070 Hb_000098_210--Hb_003171_070 Hb_003371_040 Hb_003371_040 Hb_000098_210--Hb_003371_040 Hb_060236_010 Hb_060236_010 Hb_041063_010--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_041063_010--Hb_004241_050 Hb_002054_090 Hb_002054_090 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_148817_010--Hb_095532_010 Hb_000521_350 Hb_000521_350 Hb_148817_010--Hb_000521_350 Hb_000081_030 Hb_000081_030 Hb_148817_010--Hb_000081_030 Hb_148817_010--Hb_004875_040 Hb_006314_020 Hb_006314_020 Hb_148817_010--Hb_006314_020 Hb_003469_030 Hb_003469_030 Hb_095532_010--Hb_003469_030 Hb_161981_010 Hb_161981_010 Hb_095532_010--Hb_161981_010 Hb_095532_010--Hb_000521_350 Hb_000670_080 Hb_000670_080 Hb_095532_010--Hb_000670_080 Hb_004875_040--Hb_020805_110 Hb_001856_150 Hb_001856_150 Hb_004875_040--Hb_001856_150 Hb_000676_380 Hb_000676_380 Hb_004875_040--Hb_000676_380 Hb_004875_040--Hb_006314_020 Hb_020805_110--Hb_000676_380 Hb_009711_040 Hb_009711_040 Hb_020805_110--Hb_009711_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_020805_110--Hb_003090_230 Hb_020805_110--Hb_001856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.64406 0.423263 17.0082 0.115789 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.8077 0

CAGE analysis