Hb_001158_030

Information

Type -
Description -
Location Contig1158: 7099-7696
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04739: 6626-7669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_030 0.0 - - -
2 Hb_027556_010 0.094789211 - - -
3 Hb_001186_060 0.1143147931 - - -
4 Hb_011716_040 0.1169650105 - - -
5 Hb_001930_070 0.1222925483 - - -
6 Hb_005214_110 0.1245875786 - - -
7 Hb_015456_020 0.1255149061 - - -
8 Hb_000014_100 0.1256812554 - - -
9 Hb_007245_090 0.1377919039 - - -
10 Hb_000183_070 0.1402692106 - - -
11 Hb_006499_010 0.1412776817 - - -
12 Hb_000958_010 0.1428130974 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008453_020 0.1455173227 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
14 Hb_018133_120 0.1459213541 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_000371_110 0.149811053 - - -
16 Hb_005714_040 0.1512930877 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000117_040 0.1533368482 - - 30S ribosomal protein S6A [Hevea brasiliensis]
18 Hb_002783_230 0.154630438 - - neutral/alkaline invertase [Manihot esculenta]
19 Hb_005015_010 0.1549002046 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
20 Hb_002400_390 0.1567902013 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]

Gene co-expression network

sample Hb_001158_030 Hb_001158_030 Hb_027556_010 Hb_027556_010 Hb_001158_030--Hb_027556_010 Hb_001186_060 Hb_001186_060 Hb_001158_030--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_001158_030--Hb_011716_040 Hb_001930_070 Hb_001930_070 Hb_001158_030--Hb_001930_070 Hb_005214_110 Hb_005214_110 Hb_001158_030--Hb_005214_110 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020 Hb_027556_010--Hb_011716_040 Hb_005057_010 Hb_005057_010 Hb_027556_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_027556_010--Hb_000140_150 Hb_000926_270 Hb_000926_270 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_001186_060--Hb_001930_070 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_006499_010 Hb_006499_010 Hb_001186_060--Hb_006499_010 Hb_000163_290 Hb_000163_290 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_011716_040--Hb_006499_010 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_001930_070--Hb_006499_010 Hb_007245_090 Hb_007245_090 Hb_001930_070--Hb_007245_090 Hb_001930_070--Hb_000033_050 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_005214_110--Hb_007245_090 Hb_005214_110--Hb_001930_070 Hb_000339_070 Hb_000339_070 Hb_005214_110--Hb_000339_070 Hb_005214_110--Hb_000014_100 Hb_005214_110--Hb_001186_060 Hb_000300_380 Hb_000300_380 Hb_015456_020--Hb_000300_380 Hb_005333_040 Hb_005333_040 Hb_015456_020--Hb_005333_040 Hb_004204_190 Hb_004204_190 Hb_015456_020--Hb_004204_190 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_015456_020--Hb_000014_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
188.732 62.0074 4.39417 2.68917 257.799 84.7924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
164.692 118.094 75.6743 31.7585 1.39164

CAGE analysis