Hb_002042_100

Information

Type -
Description -
Location Contig2042: 94449-94919
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02540g
description hypothetical protein
nr
ID XP_012089087.1
description PREDICTED: uncharacterized protein LOC105647565 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20942: 94347-94645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_100 0.0 - - PREDICTED: uncharacterized protein LOC105647565 [Jatropha curcas]
2 Hb_003633_060 0.1315322056 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_012251_010 0.135420149 - - -
4 Hb_002811_090 0.1356371651 - - 40S ribosomal protein S24A [Hevea brasiliensis]
5 Hb_002081_030 0.1441832461 - - unnamed protein product [Coffea canephora]
6 Hb_000215_330 0.1549355131 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
7 Hb_174865_010 0.1552389668 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
8 Hb_000005_300 0.1556533523 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027472_160 0.1564191517 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_000289_070 0.1572067759 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000577_090 0.1584735187 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
12 Hb_154141_030 0.1584858113 - - PREDICTED: histone H2AX [Populus euphratica]
13 Hb_004057_010 0.1585485528 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
14 Hb_000676_160 0.1585918359 - - folate carrier protein, putative [Ricinus communis]
15 Hb_000768_130 0.1596052769 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_001726_040 0.1602555579 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
17 Hb_000093_110 0.1605221516 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
18 Hb_001373_060 0.1612585063 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
19 Hb_179296_010 0.1649406467 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
20 Hb_000948_220 0.1652634971 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]

Gene co-expression network

sample Hb_002042_100 Hb_002042_100 Hb_003633_060 Hb_003633_060 Hb_002042_100--Hb_003633_060 Hb_012251_010 Hb_012251_010 Hb_002042_100--Hb_012251_010 Hb_002811_090 Hb_002811_090 Hb_002042_100--Hb_002811_090 Hb_002081_030 Hb_002081_030 Hb_002042_100--Hb_002081_030 Hb_000215_330 Hb_000215_330 Hb_002042_100--Hb_000215_330 Hb_174865_010 Hb_174865_010 Hb_002042_100--Hb_174865_010 Hb_001373_060 Hb_001373_060 Hb_003633_060--Hb_001373_060 Hb_179296_010 Hb_179296_010 Hb_003633_060--Hb_179296_010 Hb_000320_330 Hb_000320_330 Hb_003633_060--Hb_000320_330 Hb_004057_010 Hb_004057_010 Hb_003633_060--Hb_004057_010 Hb_000567_410 Hb_000567_410 Hb_003633_060--Hb_000567_410 Hb_001512_080 Hb_001512_080 Hb_003633_060--Hb_001512_080 Hb_000045_250 Hb_000045_250 Hb_012251_010--Hb_000045_250 Hb_000203_020 Hb_000203_020 Hb_012251_010--Hb_000203_020 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_000915_120 Hb_000915_120 Hb_012251_010--Hb_000915_120 Hb_000042_260 Hb_000042_260 Hb_012251_010--Hb_000042_260 Hb_003057_020 Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_007120_090 Hb_007120_090 Hb_002811_090--Hb_007120_090 Hb_027472_160 Hb_027472_160 Hb_002811_090--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_002081_030--Hb_000948_220 Hb_000809_060 Hb_000809_060 Hb_002081_030--Hb_000809_060 Hb_002081_030--Hb_027472_160 Hb_009778_040 Hb_009778_040 Hb_002081_030--Hb_009778_040 Hb_005306_070 Hb_005306_070 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_000735_040 Hb_000735_040 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_174865_010--Hb_179296_010 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28416 0.744503 4.1148 4.60677 0.250669 2.79826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37798 18.6422 3.50714 1.75438 4.51023

CAGE analysis