Hb_007409_020

Information

Type -
Description -
Location Contig7409: 29711-34177
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56384: 31176-33100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007409_020 0.0 - - -
2 Hb_000107_370 0.1518449288 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
3 Hb_012660_020 0.1831759296 - - -
4 Hb_003751_120 0.2049193501 - - -
5 Hb_030565_070 0.208810045 - - -
6 Hb_005539_210 0.2107536656 - - -
7 Hb_075653_020 0.2124875318 - - -
8 Hb_003142_050 0.214866523 - - -
9 Hb_005214_130 0.2156499322 - - -
10 Hb_002492_020 0.2169932548 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
11 Hb_002007_050 0.2244193881 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
12 Hb_000363_010 0.2254588691 - - -
13 Hb_003680_070 0.2273535659 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_031403_010 0.22738588 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
15 Hb_010362_020 0.2283697494 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
16 Hb_010710_020 0.2284140259 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
17 Hb_000085_300 0.2286874361 - - -
18 Hb_005211_070 0.2302815379 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
19 Hb_000934_030 0.2334869552 - - -
20 Hb_001349_010 0.233771887 - - -

Gene co-expression network

sample Hb_007409_020 Hb_007409_020 Hb_000107_370 Hb_000107_370 Hb_007409_020--Hb_000107_370 Hb_012660_020 Hb_012660_020 Hb_007409_020--Hb_012660_020 Hb_003751_120 Hb_003751_120 Hb_007409_020--Hb_003751_120 Hb_030565_070 Hb_030565_070 Hb_007409_020--Hb_030565_070 Hb_005539_210 Hb_005539_210 Hb_007409_020--Hb_005539_210 Hb_075653_020 Hb_075653_020 Hb_007409_020--Hb_075653_020 Hb_000163_200 Hb_000163_200 Hb_000107_370--Hb_000163_200 Hb_000107_370--Hb_030565_070 Hb_000107_370--Hb_003751_120 Hb_054301_010 Hb_054301_010 Hb_000107_370--Hb_054301_010 Hb_031403_010 Hb_031403_010 Hb_000107_370--Hb_031403_010 Hb_003878_030 Hb_003878_030 Hb_012660_020--Hb_003878_030 Hb_001150_030 Hb_001150_030 Hb_012660_020--Hb_001150_030 Hb_012660_020--Hb_075653_020 Hb_000363_010 Hb_000363_010 Hb_012660_020--Hb_000363_010 Hb_005618_040 Hb_005618_040 Hb_012660_020--Hb_005618_040 Hb_012660_020--Hb_000107_370 Hb_003751_120--Hb_031403_010 Hb_000304_020 Hb_000304_020 Hb_003751_120--Hb_000304_020 Hb_030765_020 Hb_030765_020 Hb_003751_120--Hb_030765_020 Hb_003751_120--Hb_005618_040 Hb_025087_010 Hb_025087_010 Hb_003751_120--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_003751_120--Hb_000085_300 Hb_030565_070--Hb_000163_200 Hb_010710_020 Hb_010710_020 Hb_030565_070--Hb_010710_020 Hb_001153_080 Hb_001153_080 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_030565_070--Hb_005618_040 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_008699_040 Hb_008699_040 Hb_075653_020--Hb_008699_040 Hb_075653_020--Hb_001723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.099492 0 0 0 0.160008 0.0881609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305977 0.240557 0.10779 0.17099 0

CAGE analysis